IL_9G8M_183
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAUA*UAAUU
- Length
- 9 nucleotides
- Bulged bases
- 9G8M|1|S2|A|555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_183 not in the Motif Atlas
- Geometric match to IL_7KJT_002
- Geometric discrepancy: 0.3953
- The information below is about IL_7KJT_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32983.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
9G8M|1|S2|A|528
9G8M|1|S2|A|529
9G8M|1|S2|U|530
9G8M|1|S2|A|531
*
9G8M|1|S2|U|553
9G8M|1|S2|A|554
9G8M|1|S2|A|555
9G8M|1|S2|U|556
9G8M|1|S2|U|557
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
Coloring options: