IL_9G8M_184

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

9G8M|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|S2|A|599
9G8M|1|S2|G|600
9G8M|1|S2|G|601
9G8M|1|S2|G|602
9G8M|1|S2|C|603
9G8M|1|S2|A|604
9G8M|1|S2|A|605
9G8M|1|S2|G|606
9G8M|1|S2|U|607
9G8M|1|S2|C|608
*
9G8M|1|S2|G|635
9G8M|1|S2|C|636
9G8M|1|S2|U|637

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SD

40S ribosomal protein S3

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30

Chain X

Cripavirus internal ribosome entry site (IRES); CrPV IRES