IL_9G8M_190

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAC*GAAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_190 not in the Motif Atlas

Geometric match to IL_8VTW_093

Geometric discrepancy: 0.3452

The information below is about IL_8VTW_093

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9G8M|1|S2|U|801
9G8M|1|S2|A|802
9G8M|1|S2|C|803
*
9G8M|1|S2|G|860
9G8M|1|S2|A|861
9G8M|1|S2|A|862
9G8M|1|S2|U|863
9G8M|1|S2|A|864

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11

Chain SW

40S ribosomal protein S15a