IL_9G8M_215
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CG*CAGG
- Length
- 6 nucleotides
- Bulged bases
- 9G8M|1|S2|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_215 not in the Motif Atlas
- Geometric match to IL_8C3A_091
- Geometric discrepancy: 0.2275
- The information below is about IL_8C3A_091
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_05035.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 38
Unit IDs
9G8M|1|S2|C|1337
9G8M|1|S2|G|1338
*
9G8M|1|S2|C|1488
9G8M|1|S2|A|1489
9G8M|1|S2|G|1490
9G8M|1|S2|G|1491
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
- Chain X
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
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