IL_9G8M_218

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUGCUA*UAGAGG

Length

13 nucleotides

Bulged bases

9G8M|1|S2|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|S2|C|1395
9G8M|1|S2|A|1396
9G8M|1|S2|U|1397
9G8M|1|S2|G|1398
9G8M|1|S2|C|1399
9G8M|1|S2|U|1400
9G8M|1|S2|A|1401
*
9G8M|1|S2|U|1445
9G8M|1|S2|A|1446
9G8M|1|S2|G|1447
9G8M|1|S2|A|1448
9G8M|1|S2|G|1449
9G8M|1|S2|G|1450

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SR

40S ribosomal protein S17

Chain SU

40S ribosomal protein S20

Chain Sg

Receptor of activated protein C kinase 1