Loop IL_9G8M

3D structure

PDB id: 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
Description: human 80S ribosome bound by a SKI2-exosome complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: ACUAGUUACGCGACCCCC*GGCGUCCCCCAACUUCU
Length: 35 nucleotides
Bulged bases: 9G8M|1|S2|U|1404, 9G8M|1|S2|C|1412, 9G8M|1|S2|A|1414, 9G8M|1|S2|C|1415, 9G8M|1|S2|C|1416, 9G8M|1|S2|C|1417, 9G8M|1|S2|C|1418, 9G8M|1|S2|G|1431, 9G8M|1|S2|C|1436, 9G8M|1|S2|C|1437
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9G8M|1|S2|A|1402
9G8M|1|S2|C|1403
9G8M|1|S2|U|1404
9G8M|1|S2|A|1405
9G8M|1|S2|G|1406
9G8M|1|S2|U|1407
9G8M|1|S2|U|1408
9G8M|1|S2|A|1409
9G8M|1|S2|C|1410
9G8M|1|S2|G|1411
9G8M|1|S2|C|1412
9G8M|1|S2|G|1413
9G8M|1|S2|A|1414
9G8M|1|S2|C|1415
9G8M|1|S2|C|1416
9G8M|1|S2|C|1417
9G8M|1|S2|C|1418
9G8M|1|S2|C|1419
*
9G8M|1|S2|G|1428
9G8M|1|S2|G|1429
9G8M|1|S2|C|1430
9G8M|1|S2|G|1431
9G8M|1|S2|U|1432
9G8M|1|S2|C|1433
9G8M|1|S2|C|1434
9G8M|1|S2|C|1435
9G8M|1|S2|C|1436
9G8M|1|S2|C|1437
9G8M|1|S2|A|1438
9G8M|1|S2|A|1439
9G8M|1|S2|C|1440
9G8M|1|S2|U|1441
9G8M|1|S2|U|1442
9G8M|1|S2|C|1443
9G8M|1|S2|U|1444

Current chains

Chain S2: 18S ribosomal RNA

Nearby chains

Chain SD: 40S ribosomal protein S3
Chain SQ: 40S ribosomal protein S16
Chain ST: 40S ribosomal protein S19
Chain SU: 40S ribosomal protein S20
Chain Sg: Receptor of activated protein C kinase 1

IL_9G8M_219