IL_9G8M_224
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_224 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.265
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
9G8M|1|S2|G|1604
9G8M|1|S2|G|1605
9G8M|1|S2|G|1606
9G8M|1|S2|A|1607
9G8M|1|S2|U|1608
9G8M|1|S2|C|1609
9G8M|1|S2|G|1610
*
9G8M|1|S2|C|1629
9G8M|1|S2|A|1630
9G8M|1|S2|U|1631
9G8M|1|S2|G|1632
9G8M|1|S2|A|1633
9G8M|1|S2|A|1634
9G8M|1|S2|C|1635
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S19
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