IL_9G8M_225

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9G8M|1|S2|C|1701, 9G8M|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_225 not in the Motif Atlas

Homologous match to IL_8P9A_452

Geometric discrepancy: 0.1921

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9G8M|1|S2|C|1700
9G8M|1|S2|C|1701
9G8M|1|S2|G|1702
*
9G8M|1|S2|C|1833
9G8M|1|S2|A|1834
9G8M|1|S2|A|1835
9G8M|1|S2|G|1836

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Sa

40S ribosomal protein S26