IL_9G8M_228

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

9G8M|1|S2|A|1824, 9G8M|1|S2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|S2|C|1708
9G8M|1|S2|G|1709
9G8M|1|S2|C|1710
9G8M|1|S2|U|1711
*
9G8M|1|S2|A|1822
9G8M|1|S2|A|1823
9G8M|1|S2|A|1824
9G8M|1|S2|A|1825
9G8M|1|S2|G|1826

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30