IL_9G8M_238

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUGCCUAG*CAAUAU

Length

14 nucleotides

Bulged bases

9G8M|1|X|U|124

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|X|A|102
9G8M|1|X|U|103
9G8M|1|X|G|104
9G8M|1|X|C|105
9G8M|1|X|C|106
9G8M|1|X|U|107
9G8M|1|X|A|108
9G8M|1|X|G|109
*
9G8M|1|X|C|121
9G8M|1|X|A|122
9G8M|1|X|A|123
9G8M|1|X|U|124
9G8M|1|X|A|125
9G8M|1|X|U|126

Current chains

Chain X

CrPV-IRES RNA

Nearby chains

Chain SF

40S ribosomal protein S5