IL_9G8M_239

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_239 not in the Motif Atlas

Geometric match to IL_8B0X_031

Geometric discrepancy: 0.2572

The information below is about IL_8B0X_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9G8M|1|X|U|110
9G8M|1|X|G|111
9G8M|1|X|G|112
*
9G8M|1|X|C|119
9G8M|1|X|A|120

Current chains

Chain X

CrPV-IRES RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SZ

40S ribosomal protein S25