IL_9G8O_028
3D structure
- PDB id
- 9G8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 40S ribosome bound by a SKI238-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 9G8O|1|S2|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8O_028 not in the Motif Atlas
- Geometric match to IL_7A0S_092
- Geometric discrepancy: 0.3104
- The information below is about IL_7A0S_092
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
9G8O|1|S2|A|599
9G8O|1|S2|G|600
9G8O|1|S2|G|601
9G8O|1|S2|G|602
9G8O|1|S2|C|603
9G8O|1|S2|A|604
9G8O|1|S2|A|605
9G8O|1|S2|G|606
9G8O|1|S2|U|607
9G8O|1|S2|C|608
*
9G8O|1|S2|G|635
9G8O|1|S2|C|636
9G8O|1|S2|U|637
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
- Chain X
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
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