IL_9G8O_039

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9G8O|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8O_039 not in the Motif Atlas

Homologous match to IL_8C3A_510

Geometric discrepancy: 0.1534

The information below is about IL_8C3A_510

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

9G8O|1|S2|G|925
9G8O|1|S2|A|926
9G8O|1|S2|C|927
*
9G8O|1|S2|G|1014
9G8O|1|S2|U|1015
9G8O|1|S2|U|1016
9G8O|1|S2|U|1017

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27