IL_9G8O_075

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8O_075 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.116

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9G8O|1|S2|G|1702
9G8O|1|S2|C|1703
9G8O|1|S2|C|1704
9G8O|1|S2|C|1705
*
9G8O|1|S2|G|1829
9G8O|1|S2|U|1830
9G8O|1|S2|A|1831
9G8O|1|S2|A|1832
9G8O|1|S2|C|1833

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41