IL_9G8O_078

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8O_078 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.2066

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

9G8O|1|S2|C|1713
9G8O|1|S2|U|1714
9G8O|1|S2|A|1715
9G8O|1|S2|C|1716
*
9G8O|1|S2|G|1817
9G8O|1|S2|A|1818
9G8O|1|S2|A|1819
9G8O|1|S2|G|1820

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30