IL_9G8O_081

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUA*UUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8O_081 not in the Motif Atlas

Geometric match to IL_8C3A_479

Geometric discrepancy: 0.321

The information below is about IL_8C3A_479

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

9G8O|1|S2|U|1728
9G8O|1|S2|U|1729
9G8O|1|S2|U|1730
9G8O|1|S2|A|1731
*
9G8O|1|S2|U|1803
9G8O|1|S2|U|1804
9G8O|1|S2|G|1805
9G8O|1|S2|A|1806

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8