IL_9G8O_082

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8O_082 not in the Motif Atlas

Homologous match to IL_8P9A_460

Geometric discrepancy: 0.116

The information below is about IL_8P9A_460

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9G8O|1|S2|U|1733
9G8O|1|S2|G|1734
9G8O|1|S2|A|1735
9G8O|1|S2|G|1736
*
9G8O|1|S2|C|1798
9G8O|1|S2|G|1799
9G8O|1|S2|A|1800
9G8O|1|S2|A|1801

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8