IL_9GFT_010

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_010 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1238

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9GFT|1|0|C|132
9GFT|1|0|U|133
9GFT|1|0|G|134
9GFT|1|0|C|135
9GFT|1|0|C|136
*
9GFT|1|0|G|227
9GFT|1|0|A|228
9GFT|1|0|U|229
9GFT|1|0|G|230

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein bS16

Chain u

Small ribosomal subunit protein bS20