3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGCC*GAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_010 not in the Motif Atlas
Homologous match to IL_4LFB_008
Geometric discrepancy: 0.1238
The information below is about IL_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

9GFT|1|0|C|132
9GFT|1|0|U|133
9GFT|1|0|G|134
9GFT|1|0|C|135
9GFT|1|0|C|136
*
9GFT|1|0|G|227
9GFT|1|0|A|228
9GFT|1|0|U|229
9GFT|1|0|G|230

Current chains

Chain 0
16S ribosomal RNA

Nearby chains

Chain I
Small ribosomal subunit protein bS16
Chain u
Small ribosomal subunit protein bS20

Coloring options:


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