IL_9GFT_016

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_016 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1532

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9GFT|1|0|G|292
9GFT|1|0|G|293
*
9GFT|1|0|U|304
9GFT|1|0|G|305
9GFT|1|0|A|306
9GFT|1|0|C|307
9GFT|1|0|C|308

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein bS16