IL_9GFT_024

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_024 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1065

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9GFT|1|0|C|504
9GFT|1|0|G|505
9GFT|1|0|G|506
9GFT|1|0|C|507
9GFT|1|0|U|508
9GFT|1|0|A|509
9GFT|1|0|A|510
9GFT|1|0|C|511
*
9GFT|1|0|G|540
9GFT|1|0|G|541

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein uS4

Chain E

Small ribosomal subunit protein uS12