IL_9GFT_026

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9GFT|1|0|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_026 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1109

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9GFT|1|0|C|569
9GFT|1|0|G|570
9GFT|1|0|U|571
9GFT|1|0|A|572
9GFT|1|0|A|573
9GFT|1|0|A|574
9GFT|1|0|G|575
*
9GFT|1|0|C|880
9GFT|1|0|G|881

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS12

Chain J

Small ribosomal subunit protein uS17