IL_9GFT_034
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_034 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.1031
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
9GFT|1|0|A|673
9GFT|1|0|G|674
9GFT|1|0|A|675
9GFT|1|0|A|676
9GFT|1|0|U|677
*
9GFT|1|0|G|713
9GFT|1|0|G|714
9GFT|1|0|A|715
9GFT|1|0|A|716
9GFT|1|0|U|717
Current chains
- Chain 0
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Small ribosomal subunit protein bS6, fully modified isoform
- Chain D
- Small ribosomal subunit protein uS11
- Chain K
- Small ribosomal subunit protein bS18
- Chain P
- Large ribosomal subunit protein uL2
- Chain v
- Small ribosomal subunit protein bS21
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