IL_9GFT_037

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_037 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0814

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9GFT|1|0|C|779
9GFT|1|0|A|780
9GFT|1|0|A|781
9GFT|1|0|A|782
9GFT|1|0|C|783
*
9GFT|1|0|G|799
9GFT|1|0|G|800
9GFT|1|0|U|801
9GFT|1|0|A|802
9GFT|1|0|G|803

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS11

Chain N

Large subunit ribosomal RNA; LSU rRNA

Chain v

Small ribosomal subunit protein bS21