IL_9GFT_055
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACC*GCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_055 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.1543
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
9GFT|1|0|C|1259
9GFT|1|0|G|1260
9GFT|1|0|A|1261
9GFT|1|0|C|1262
9GFT|1|0|C|1263
*
9GFT|1|0|G|1272
9GFT|1|0|C|1273
9GFT|1|0|A|1274
9GFT|1|0|A|1275
9GFT|1|0|G|1276
Current chains
- Chain 0
- 16S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS14
- Chain t
- Small ribosomal subunit protein uS19
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