IL_9GFT_058
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_058 not in the Motif Atlas
- Homologous match to IL_4LFB_068
- Geometric discrepancy: 0.0917
- The information below is about IL_4LFB_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GFT|1|0|G|1401
9GFT|1|0|C|1402
9GFT|1|0|C|1403
9GFT|1|0|C|1404
*
9GFT|1|0|G|1497
9GFT|1|0|U|1498
9GFT|1|0|A|1499
9GFT|1|0|A|1500
9GFT|1|0|C|1501
Current chains
- Chain 0
- 16S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS12
- Chain M
- Transfer RNA; tRNA
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain w
- messenger RNA
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