IL_9GFT_120

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_120 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.2452

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

9GFT|1|AA|C|1129
9GFT|1|AA|A|1130
9GFT|1|AA|G|1131
9GFT|1|AA|C|1132
*
9GFT|1|AA|G|1142
9GFT|1|AA|G|1143

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

Small ribosomal subunit protein uS9