3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_128 not in the Motif Atlas
Homologous match to IL_5J7L_363
Geometric discrepancy: 0.0961
The information below is about IL_5J7L_363
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

9GFT|1|AA|G|1405
9GFT|1|AA|U|1406
9GFT|1|AA|C|1407
*
9GFT|1|AA|G|1494
9GFT|1|AA|U|1495
9GFT|1|AA|C|1496

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain A3
Transfer RNA; tRNA
Chain AV
Large subunit ribosomal RNA; LSU rRNA
Chain w
messenger RNA
Chain z
Small ribosomal subunit protein uS12

Coloring options:


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