IL_9GFT_135

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_135 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.1185

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GFT|1|AV|G|24
9GFT|1|AV|U|25
9GFT|1|AV|G|26
9GFT|1|AV|G|27
9GFT|1|AV|A|28
9GFT|1|AV|U|29
9GFT|1|AV|G|30
*
9GFT|1|AV|C|510
9GFT|1|AV|U|511
9GFT|1|AV|G|512
9GFT|1|AV|A|513
9GFT|1|AV|A|514
9GFT|1|AV|A|515
9GFT|1|AV|C|516

Current chains

Chain AV

23S RNA

Nearby chains

Chain Al

Large ribosomal subunit protein bL20

Chain An

Large ribosomal subunit protein uL22

Chain Av

Large ribosomal subunit protein bL32