IL_9GFT_136

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9GFT|1|AV|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_136 not in the Motif Atlas

Homologous match to IL_7A0S_002

Geometric discrepancy: 0.1233

The information below is about IL_7A0S_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

9GFT|1|AV|G|36
9GFT|1|AV|C|37
*
9GFT|1|AV|G|442
9GFT|1|AV|A|443
9GFT|1|AV|C|444

Current chains

Chain AV

23S RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Al

Large ribosomal subunit protein bL20