IL_9GFT_138
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 9GFT|1|AV|U|100, 9GFT|1|AV|U|102
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_138 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.3773
- The information below is about IL_5J7L_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
9GFT|1|AV|G|81
9GFT|1|AV|U|82
9GFT|1|AV|A|83
9GFT|1|AV|A|84
9GFT|1|AV|G|85
*
9GFT|1|AV|C|97
9GFT|1|AV|G|98
9GFT|1|AV|U|99
9GFT|1|AV|U|100
9GFT|1|AV|A|101
9GFT|1|AV|U|102
9GFT|1|AV|A|103
9GFT|1|AV|A|104
9GFT|1|AV|C|105
Current chains
- Chain AV
- 23S RNA
Nearby chains
- Chain Ap
- Large ribosomal subunit protein uL24
- Chain At
- Large ribosomal subunit protein uL29
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