IL_9GFT_143

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

9GFT|1|AV|U|276, 9GFT|1|AV|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_143 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.429

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9GFT|1|AV|C|274
9GFT|1|AV|C|275
9GFT|1|AV|U|276
9GFT|1|AV|G|277
9GFT|1|AV|A|278
9GFT|1|AV|A|279
9GFT|1|AV|U|280
9GFT|1|AV|C|281
*
9GFT|1|AV|G|359
9GFT|1|AV|U|360
9GFT|1|AV|G|361
9GFT|1|AV|A|362
9GFT|1|AV|G|363

Current chains

Chain AV

23S RNA

Nearby chains