IL_9GFT_146
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 9GFT|1|AV|A|504, 9GFT|1|AV|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_146 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.1092
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
9GFT|1|AV|G|481
9GFT|1|AV|A|482
9GFT|1|AV|A|483
9GFT|1|AV|C|484
*
9GFT|1|AV|G|496
9GFT|1|AV|A|497
9GFT|1|AV|G|498
9GFT|1|AV|U|499
9GFT|1|AV|G|500
9GFT|1|AV|A|501
9GFT|1|AV|A|502
9GFT|1|AV|A|503
9GFT|1|AV|A|504
9GFT|1|AV|A|505
9GFT|1|AV|G|506
9GFT|1|AV|A|507
9GFT|1|AV|A|508
9GFT|1|AV|C|509
Current chains
- Chain AV
- 23S RNA
Nearby chains
- Chain An
- Large ribosomal subunit protein uL22
- Chain Ap
- Large ribosomal subunit protein uL24
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