IL_9GFT_147

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_147 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1131

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9GFT|1|AV|G|536
9GFT|1|AV|G|537
9GFT|1|AV|A|538
9GFT|1|AV|G|539
*
9GFT|1|AV|U|554
9GFT|1|AV|G|555
9GFT|1|AV|A|556
9GFT|1|AV|C|557

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ae

Large ribosomal subunit protein uL13

Chain Al

Large ribosomal subunit protein bL20