3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UU*GGA
Length
5 nucleotides
Bulged bases
9GFT|1|AV|G|729
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_153 not in the Motif Atlas
Homologous match to IL_7A0S_017
Geometric discrepancy: 0.1151
The information below is about IL_7A0S_017
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

9GFT|1|AV|U|702
9GFT|1|AV|U|703
*
9GFT|1|AV|G|728
9GFT|1|AV|G|729
9GFT|1|AV|A|730

Current chains

Chain AV
23S RNA

Nearby chains

Chain AX
Large ribosomal subunit protein uL2

Coloring options:


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