3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_157 not in the Motif Atlas
Homologous match to IL_7A0S_022
Geometric discrepancy: 0.1543
The information below is about IL_7A0S_022
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

9GFT|1|AV|C|837
9GFT|1|AV|C|838
*
9GFT|1|AV|G|940
9GFT|1|AV|A|941
9GFT|1|AV|G|942

Current chains

Chain AV
23S RNA

Nearby chains

Chain Ag
Large ribosomal subunit protein uL15
Chain Ay
Large ribosomal subunit protein bL35

Coloring options:


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