3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCA*UG
Length
5 nucleotides
Bulged bases
9GFT|1|AV|C|995
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_166 not in the Motif Atlas
Homologous match to IL_4WF9_035
Geometric discrepancy: 0.1632
The information below is about IL_4WF9_035
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

9GFT|1|AV|C|994
9GFT|1|AV|C|995
9GFT|1|AV|A|996
*
9GFT|1|AV|U|1159
9GFT|1|AV|G|1160

Current chains

Chain AV
23S RNA

Nearby chains

Chain Ae
Large ribosomal subunit protein uL13
Chain Al
Large ribosomal subunit protein bL20
Chain Am
Large ribosomal subunit protein bL21
Chain Au
Large ribosomal subunit protein uL30

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1928 s