IL_9GFT_166

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

9GFT|1|AV|C|995

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_166 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.1632

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9GFT|1|AV|C|994
9GFT|1|AV|C|995
9GFT|1|AV|A|996
*
9GFT|1|AV|U|1159
9GFT|1|AV|G|1160

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ae

Large ribosomal subunit protein uL13

Chain Al

Large ribosomal subunit protein bL20

Chain Am

Large ribosomal subunit protein bL21

Chain Au

Large ribosomal subunit protein uL30