3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
9GFT|1|AV|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_167 not in the Motif Atlas
Homologous match to IL_5J7L_277
Geometric discrepancy: 0.1447
The information below is about IL_5J7L_277
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

9GFT|1|AV|C|998
9GFT|1|AV|U|999
9GFT|1|AV|A|1000
9GFT|1|AV|A|1001
9GFT|1|AV|G|1002
*
9GFT|1|AV|C|1153
9GFT|1|AV|G|1154
9GFT|1|AV|A|1155
9GFT|1|AV|A|1156
9GFT|1|AV|G|1157

Current chains

Chain AV
23S RNA

Nearby chains

Chain AW
5S ribosomal RNA; 5S rRNA
Chain Al
Large ribosomal subunit protein bL20
Chain Am
Large ribosomal subunit protein bL21
Chain Au
Large ribosomal subunit protein uL30

Coloring options:


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