IL_9GFT_167

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9GFT|1|AV|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_167 not in the Motif Atlas

Homologous match to IL_5J7L_277

Geometric discrepancy: 0.1447

The information below is about IL_5J7L_277

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9GFT|1|AV|C|998
9GFT|1|AV|U|999
9GFT|1|AV|A|1000
9GFT|1|AV|A|1001
9GFT|1|AV|G|1002
*
9GFT|1|AV|C|1153
9GFT|1|AV|G|1154
9GFT|1|AV|A|1155
9GFT|1|AV|A|1156
9GFT|1|AV|G|1157

Current chains

Chain AV

23S RNA

Nearby chains

Chain AW

5S ribosomal RNA; 5S rRNA

Chain Al

Large ribosomal subunit protein bL20

Chain Am

Large ribosomal subunit protein bL21

Chain Au

Large ribosomal subunit protein uL30