IL_9GFT_170

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_170 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1833

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9GFT|1|AV|U|1018
9GFT|1|AV|U|1019
9GFT|1|AV|A|1020
9GFT|1|AV|A|1021
9GFT|1|AV|G|1022
9GFT|1|AV|U|1023
9GFT|1|AV|G|1024
*
9GFT|1|AV|C|1140
9GFT|1|AV|U|1141
9GFT|1|AV|A|1142
9GFT|1|AV|A|1143
9GFT|1|AV|A|1144

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ab

Large ribosomal subunit protein uL6

Chain Ae

Large ribosomal subunit protein uL13

Chain Az

Large ribosomal subunit protein bL36A