IL_9GFT_176

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

9GFT|1|AV|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_176 not in the Motif Atlas

Homologous match to IL_5J7L_385

Geometric discrepancy: 0.4776

The information below is about IL_5J7L_385

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

9GFT|1|AV|G|1087
9GFT|1|AV|A|1088
9GFT|1|AV|A|1089
9GFT|1|AV|A|1090
*
9GFT|1|AV|U|1101
9GFT|1|AV|C|1102

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ad

50S ribosomal protein L11

Chain Az

Large ribosomal subunit protein bL36A