3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAA*UC
Length
6 nucleotides
Bulged bases
9GFT|1|AV|A|1088
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_176 not in the Motif Atlas
Homologous match to IL_5J7L_385
Geometric discrepancy: 0.4776
The information below is about IL_5J7L_385
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

9GFT|1|AV|G|1087
9GFT|1|AV|A|1088
9GFT|1|AV|A|1089
9GFT|1|AV|A|1090
*
9GFT|1|AV|U|1101
9GFT|1|AV|C|1102

Current chains

Chain AV
23S RNA

Nearby chains

Chain Ad
50S ribosomal protein L11
Chain Az
Large ribosomal subunit protein bL36A

Coloring options:


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