IL_9GFT_177

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9GFT|1|AV|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_177 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1333

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

9GFT|1|AV|C|1196
9GFT|1|AV|G|1197
9GFT|1|AV|U|1198
*
9GFT|1|AV|A|1247
9GFT|1|AV|G|1248
9GFT|1|AV|U|1249
9GFT|1|AV|G|1250

Current chains

Chain AV

23S RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Ag

Large ribosomal subunit protein uL15

Chain Al

Large ribosomal subunit protein bL20