IL_9GFT_178

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

9GFT|1|AV|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_178 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1303

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

9GFT|1|AV|G|1202
9GFT|1|AV|U|1203
9GFT|1|AV|A|1204
9GFT|1|AV|A|1205
9GFT|1|AV|G|1206
*
9GFT|1|AV|U|1240
9GFT|1|AV|A|1241
9GFT|1|AV|U|1242
9GFT|1|AV|C|1243

Current chains

Chain AV

23S RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Ag

Large ribosomal subunit protein uL15