IL_9GFT_196

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_196 not in the Motif Atlas

Homologous match to IL_4WF9_063

Geometric discrepancy: 0.1722

The information below is about IL_4WF9_063

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

9GFT|1|AV|G|1663
9GFT|1|AV|A|1664
9GFT|1|AV|A|1665
*
9GFT|1|AV|U|1995
9GFT|1|AV|C|1996
9GFT|1|AV|C|1997

Current chains

Chain AV

23S RNA

Nearby chains

Chain AY

50S ribosomal protein L3

Chain Af

Large ribosomal subunit protein uL14

Chain Ak

Large ribosomal subunit protein bL19