IL_9GFT_197

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_197 not in the Motif Atlas

Geometric match to IL_8C3A_082

Geometric discrepancy: 0.124

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

9GFT|1|AV|G|1666
9GFT|1|AV|G|1667
9GFT|1|AV|A|1668
9GFT|1|AV|A|1669
*
9GFT|1|AV|U|1993
9GFT|1|AV|C|1994

Current chains

Chain AV

23S RNA

Nearby chains

Chain AY

50S ribosomal protein L3

Chain Af

Large ribosomal subunit protein uL14