IL_9GFT_209

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_209 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1986

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9GFT|1|AV|U|1864
9GFT|1|AV|U|1865
9GFT|1|AV|A|1866
9GFT|1|AV|G|1867
*
9GFT|1|AV|C|1874
9GFT|1|AV|G|1875
9GFT|1|AV|A|1876
9GFT|1|AV|A|1877
9GFT|1|AV|G|1878

Current chains

Chain AV

23S RNA

Nearby chains

Chain AK

Large ribosomal subunit protein uL1