IL_9GFT_213

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9GFT|1|AV|C|2055, 9GFT|1|AV|U|2613, 9GFT|1|AV|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_213 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1318

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

9GFT|1|AV|A|2054
9GFT|1|AV|C|2055
9GFT|1|AV|G|2056
*
9GFT|1|AV|C|2612
9GFT|1|AV|U|2613
9GFT|1|AV|A|2614
9GFT|1|AV|U|2615

Current chains

Chain AV

23S RNA

Nearby chains

Chain AY

50S ribosomal protein L3

Chain An

Large ribosomal subunit protein uL22

Chain Av

Large ribosomal subunit protein bL32