3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
9GFT|1|AV|G|2238
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_216 not in the Motif Atlas
Homologous match to IL_5J7L_325
Geometric discrepancy: 0.1317
The information below is about IL_5J7L_325
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_85599.2
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
9

Unit IDs

9GFT|1|AV|U|2081
9GFT|1|AV|A|2082
9GFT|1|AV|G|2083
*
9GFT|1|AV|U|2236
9GFT|1|AV|G|2237
9GFT|1|AV|G|2238
9GFT|1|AV|G|2239

Current chains

Chain AV
23S RNA

Nearby chains

Chain AX
Large ribosomal subunit protein uL2
Chain As
Large ribosomal subunit protein bL28

Coloring options:


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