IL_9GFT_216

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9GFT|1|AV|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_216 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.1317

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9GFT|1|AV|U|2081
9GFT|1|AV|A|2082
9GFT|1|AV|G|2083
*
9GFT|1|AV|U|2236
9GFT|1|AV|G|2237
9GFT|1|AV|G|2238
9GFT|1|AV|G|2239

Current chains

Chain AV

23S RNA

Nearby chains

Chain AX

Large ribosomal subunit protein uL2

Chain As

Large ribosomal subunit protein bL28