3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_218 not in the Motif Atlas
Geometric match to IL_6IA2_005
Geometric discrepancy: 0.2261
The information below is about IL_6IA2_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

9GFT|1|AV|C|2096
9GFT|1|AV|A|2097
9GFT|1|AV|U|2098
*
9GFT|1|AV|A|2191
9GFT|1|AV|U|2192
9GFT|1|AV|G|2193

Current chains

Chain AV
23S RNA

Nearby chains

Chain Ac
Large ribosomal subunit protein bL9

Coloring options:


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