IL_9GFT_224

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

9GFT|1|AV|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_224 not in the Motif Atlas

Homologous match to IL_5J7L_331

Geometric discrepancy: 0.1465

The information below is about IL_5J7L_331

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9GFT|1|AV|U|2202
9GFT|1|AV|U|2203
9GFT|1|AV|G|2204
*
9GFT|1|AV|U|2220
9GFT|1|AV|G|2221

Current chains

Chain AV

23S RNA

Nearby chains

Chain AX

Large ribosomal subunit protein uL2

Chain Ac

Large ribosomal subunit protein bL9

Chain As

Large ribosomal subunit protein bL28