IL_9GFT_225

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_225 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.137

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9GFT|1|AV|C|2350
9GFT|1|AV|G|2351
9GFT|1|AV|A|2352
9GFT|1|AV|G|2353
*
9GFT|1|AV|C|2364
9GFT|1|AV|G|2365
9GFT|1|AV|A|2366
9GFT|1|AV|G|2367

Current chains

Chain AV

23S RNA

Nearby chains

Chain Aj

Large ribosomal subunit protein uL18

Chain Ar

Large ribosomal subunit protein bL27

Chain Ay

Large ribosomal subunit protein bL35