3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AG*CCU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_227 not in the Motif Atlas
Homologous match to IL_4WF9_089
Geometric discrepancy: 0.1568
The information below is about IL_4WF9_089
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

9GFT|1|AV|A|2453
9GFT|1|AV|G|2454
*
9GFT|1|AV|C|2498
9GFT|1|AV|C|2499
9GFT|1|AV|U|2500

Current chains

Chain AV
23S RNA

Nearby chains

Chain A3
Transfer RNA; tRNA
Chain AY
50S ribosomal protein L3

Coloring options:


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